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Biomedical Proteomics Laboratory
2-Dimensional Gel Electrophoresis

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2D gel electrophoresis resources include:

Ettan™ IPGphor™ II (GE-Healthcare)

2-Dimensional Gel ElectrophoresisEttan™ IPGphor™ isoelectric focusing (IEF) System performs first dimension isoelectric focusing in the first dimension of 2D gel electrophoresis.  It runs up to 12 IPG strips (7, 11, 13, 18, or 24 cm) simultaneously using ceramic Ettan IPGphor manifold.  Sample cups can be used with Ettan IPGphor ceramic manifold to significantly increase protein loads.  The manifold is made of aluminum oxide ceramic that exhibits exceptionally uniform thermal characteristics.  The high heat conductivity of the ceramic material prevents any "hot spots" that can distort 2D gel electrophoresis maps.

Ettan DALTsix Large Vertical System (GE-Healthcare)
This is a modular system for large format and medium throughput 2-D electrophoresis.  The components include Ettan DALTsix Electrophoresis Unit, Gel Caster and Gradient Maker, an EPS 601 Power Supply, and MultiTemp™ III Thermostatic Circulator.  A built-in ceramic heat exchanger and buffer circulation pump ensure efficient cooling.  It runs up to six large format (26 × 20 cm) second-dimension polyacrylamide gels in 7 - 8 h.  It runs faster at higher temperature (>15oC).  The system gels accommodate first dimension 17, 18- or 24-cm Immobiline DryStrip gels (IPG strips) from both Ettan IPGphor™ and Multiphor™ II isoelectric focusing systems.

Rotofor (Bio-Rad)
Rotofor (Bio-Rad) The Rotofor cell is a unique preparative protein purification device that separates/fractionates complex proteins samples in free solution by liquid-phase isoelectric focusing (IEF). Fractionation by liquid-phase IEF is particularly beneficial for those proteins that are insoluble or otherwise do not separate well in other, gel-based IEF media. Liquid-phase IEF enables fractionation of proteins in their native state by isoelectric point (pI). It offers rapid, simple, and effective fractionation and purification of low-abundance proteins from complex protein mixtures. The fractions from a run can be easily harvested within specific pH intervals. Fractions obtained with the Rotofor may be subjected to further purification by gel electrophoresis, chromatography, precipitation, etc.

The Rotofor system has a cylindrical focusing chamber, which is available in different sizes – standard, mini, and micro. The standard Rotofor chamber holds ca. 60 mL of sample, and is commonly used to fractionate samples (a few mg to 4 g of total protein) into 20 distinct fractions. The mini Rotofor chamber holds 18 ml of sample and is ideal for small samples (µg to mg protein) fractionation into 20 distinct fractions. The mini Rotofor chamber is also ideal for refractionation of samples harvested from a standard Rotofor run. The micro Rotofor accommodates/processes 2.5 mL sample (µg to mg protein). It separates samples into ten 200 – 500 µL fractions. It enables 500-fold purification of complex mixture of sample within 3 h; a vacuum fraction collector instantly collects the resulting fractions. Selected fractions from an initial run may be collected, pooled, and refractionated, resulting in up to 1,000-fold purification.

Experion (Bio-Rad)
The Experion is an automated 1D electrophoresis system. It performs the multiple steps of gel-based electrophoresis including separation, staining, destaining, band detection, imaging, and data analysis. The Experion system produces rapid highly reproducible separation and quantitation of protein or RNA (either mRNA or total RNA) samples. The system requires very little sample (ng - µg), with reproducible separation of protein and RNA samples (10–12 samples simultaneously) in 30 minutes.

The Experion system components include Experion automated electrophoresis station, Experion priming station, Experion vortex station (for RNA applications) and Experion software. The Experion system contains three analysis kits: The Pro260 kit (separates and detects 2.5–2,000 ng/µl protein) for protein separation and analysis, the RNA StdSens kit (detects 25–500 ng/µl RNA) for standard-sensitivity RNA detection, and the RNA HighSens kit (200–5,000 pg/µl RNA) for high-sensitivity RNA detection. The Experion chips require 4 µl of sample per well for protein analysis and 1 µl of sample per well for RNA analysis. The sample wells can hold 4–10 µl (sample, ladder, and destain), and the gel well holds 7–18 µl gel matrix.

More information

See vendors' site:  GE_Healthcare  Bio-Rad

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